PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 329aa    MW: 35321.2 Da    PI: 8.4221
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017026.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.7e-15229265135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Do017026.1 229 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 265
                 **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.5E-897132IPR010399Tify domain
PROSITE profilePS5132015.17997132IPR010399Tify domain
PfamPF062007.3E-1299131IPR010399Tify domain
PfamPF062032.1E-15158198IPR010402CCT domain
PROSITE profilePS5101713.473158200IPR010402CCT domain
SMARTSM004013.2E-11223277IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-10226280No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13227267IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
CDDcd002023.51E-13229283No hitNo description
PfamPF003205.0E-13229265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRSLLTSHGR TRRPAVYMCA VRHHHACAAP VHPSTRALEP SPSAPVRASP PSDPQPMAAE  60
PAADDHDPRP PPADGPAAAG GGDASASASA AAAEALMSAA SEQLTMVYQG DVYVFDPVPP  120
QKVQAVLLVL GGYELPPGLV NMAVPTANDE KNTMAAIRVA SLMRFREKRK ERCFDKRIRY  180
SVRKEVAQKM KRRKGQFAGR SDFGDGACSS AACGSPANGE DDHFRETHCQ NCGISSRLTP  240
AMRRGPAGPR SLCNACGLMW ANKGTLRSPL NAPKMTPQHP VNPSKMGDTD DKNLIVLPME  300
HNQATVMMLE QEQKLDICPP TEEDIKSVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582860.0EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981867.11e-159PREDICTED: GATA transcription factor 28-like
SwissprotQ0DNU11e-131GAT19_ORYSJ; GATA transcription factor 19
TrEMBLK4ACZ01e-168K4ACZ0_SETIT; Uncharacterized protein
STRINGSi036747m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-53ZIM-LIKE 2